Scaffold Ga0213869_10056355

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10056355
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2025
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050340	Metagenome / Metatranscriptome	145	Y
F052583	Metagenome / Metatranscriptome	142	Y
F053650	Metagenome / Metatranscriptome	141	N
F062719	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100563552	F062719	GGA	MTKQEIFDEPIWPSRLIFNAKLLFGKPWKDCDEYEQLAVRLRSLGIDKNEIQ
Ga0213869_100563553	F050340	GAG	MKHEEFDKMMGHAMDHVKELVETAKEIKRNRIIALNQRDLKENGIEND
Ga0213869_100563555	F053650	AGG	MKKLIRKRRHMAFVRRYIVELQWDSLNTMLVASKTQWNDDIVKALDNNARLIRKYERRRRWLRF
Ga0213869_100563557	F052583	N/A	NPVVRVKSINIPKGYLANRQIFDGLIGDESEIRANVWIKKWEYNGKKGLSVWLSAYVITNLVEYKTNDSDALFEGLPDVGELVPGQESVPTSKPNVASQADAFGDADGDDLPF