Scaffold Ga0213869_10048750

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10048750
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2214
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014373	Metagenome / Metatranscriptome	263	N
F016661	Metagenome	245	Y
F078585	Metagenome	116	N
F095309	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1004875011	F014373	AGGA	MSRCKACDVILTEAELRKRDRVTDEHLDLCAVCHSASDEAIEENWATLEERAI
Ga0213869_100487503	F016661	GGAG	MNYNAERYLALKRYELEVKRNKIRALLWNVSIGSIYTMAVIQVFTGVIS
Ga0213869_100487504	F095309	GGA	MKYSEYRKKLRKLSAKYNESYKRYGWGADTTRKLRQQKMDLRAKYALHSFDYAVETLTSKGVL
Ga0213869_100487509	F078585	AGGAG	MSRYEDDSSYDYSDYCEGKGYYESYTEKPFDEDEASLRRIEAREEAERLTKLYPPIGKQEMQERIKEVKTRLGEKYND