Scaffold Ga0213869_10045455

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10045455
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2308
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007750	Metagenome	345	Y
F009559	Metagenome	316	Y
F021299	Metagenome / Metatranscriptome	219	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100454551	F021299	N/A	CVRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMHPPTEKLGG
Ga0213869_100454552	F007750	AGGAGG	LAFLGDFGKFFGLGSSKEVLGDAGAATATFLGLPPEAGRQVGRTVARATDNLAGDSNVSPLSTADQALEQSAVPVSQVGSARPSETANIGLTGMQTTQAGFGNLLPFISQAGRFLTSKPGQIATGVGTAVGLGSTQLMGSDSRMRPVLTQSRRNKSKVRQLVNFMGIEGTANFLSQSMNVNVSPNDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRASSTTLIKN
Ga0213869_100454555	F009559	N/A	MNQVLLYASIIVASMSFFLCLYACVRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRING