Scaffold Ga0213869_10041065

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10041065
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2459
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001607	Metagenome / Metatranscriptome	664	Y
F001614	Metagenome / Metatranscriptome	663	Y
F038153	Metagenome	166	Y
F056432	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100410651	F056432	N/A	TRVAEFERSVHDIDWQVISELSLDVAKLKKAAQKWQNNENANVKVSQKDLLERALAERLIQQSGTVQPIRKMEM
Ga0213869_100410652	F038153	GGAG	LAFLGDFGKIFLGGASTADVGGTIGGLFGQPTIGRTIGKTVSDFTSSAGDVLDVTQTPAGVDSPATVSSVSQTSQVTPRPTISPAQQGFGMQVPQQAFIGGLAPLVGQGIGQAARLLSRPGVAPTVGGFAAGAVADFFIDAFGNTKKLVITRKMQRDVKKLFMMSGGDFNMTAELYRMATGRSISGEQVVQIITRTFKNQGPYVTKAAVRKTRSTIRKMETLCDLKDRLAPPRRAPARRRATSATKILQVK
Ga0213869_100410653	F001607	AGG	MPVIANNVSLTAGSSSVNIFDNTNYQFVNEGTEIRVSAAVVGANDGIDGANVNYRFTINNTEFADNAIVPTLVTGQPFTDGAASYRTNAVIATGQSRNRPLLVFRNQTAGTLVVKFYVFISQQA
Ga0213869_100410655	F001614	N/A	MLDFFGTYGGHICGFGGFLAAIAAVLYARTRVAEFERSVHDIDWQVISELSLDVAKLKKAAQKWQNNENANVKVSQKDLLERALTERLIQQSGTVQPIRKMEM