Scaffold Ga0213869_10040706

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10040706
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2472
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005038	Metagenome / Metatranscriptome	414	Y
F035491	Metagenome	172	N
F089158	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100407062	F035491	AGGAGG	MNLRTKPTWELRAIVKALSLIPFFNTDEDNERLEQAQIVLYERRLKNSQPIKMEVK
Ga0213869_100407063	F005038	GGAGG	MKAKDINIYNIFSATYKRKMFSFIGFGELSIMPKVDKPIRQISNVYQFPIKQYYNQKRRV
Ga0213869_100407066	F089158	AGGAGG	MKESKVKWHGQDNYNMNCDIEELEKLGFICSSYNNDLAPSYMNKKENIQIFFFDLESDEMKAEERKFKYSLMKLDEHREYSSDIGQTNSFDEMIKLVKKNEND