NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10039559

Scaffold Ga0213869_10039559


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10039559 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2515
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074740Metagenome119Y
F079332Metagenome116Y
F086302Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100395591F074740N/AMKTIKVEHIWNTDNDRWIYLEYNEQNKICGMNFMQGDEYEEFKVNWVVNDPGLMEFYTEMIHTFPIEKNSVDTITFINKVMWAYCSADQIRAKY
Ga0213869_100395593F079332N/AMTGTNAEHLAEQIAEVTIQQMYDTIDHQLEYVDIDLDGDEYYNMLETITELTIKNIINTLNK
Ga0213869_100395598F086302N/AMNENNYEPGIHTFATDKIQSKLVNLMFAIEDTKKQLRTGIYGGVTKEEMEMVLDSEKREKQIYEYILNALDNKND
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