Scaffold Ga0213869

Basic Information
Taxon OID	3300021375 Open in IMG/M
Scaffold ID	Ga0213869_10030722 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021375 Open in IMG/M

Scaffold ID

Ga0213869_10030722 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2932
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2932

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F042021	Metagenome	159	Y
F043087	Metagenome	157	N
F097668	Metagenome	104	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100307221	F042021	GGAG	MDFKDIAKQEELWKDIVLKGEMLTIKLLTEEAKKELEEKIANFLITRKEAIASNKFVFMFRDKEYTIDKDNVDIAIKNWASSKNISKHRALLAYKKAETNAWIYKTLLDKKKTGMFKACKKLILVGSGIYPYSMFDIHKKYKHIKQIGIEIDTNRAAIGRDLVSKSPAKNHIQIITHDGCTYDYGNINLGEDDLVFVSCDVDNKKVIDRVIATSKAHIFICAPYEKTWLRALVQNIKVAKHS
Ga0213869_100307222	F043087	AGGA	MSVGFLTQYYRGLGHSQRIKFIAEKTAEYTDVVIMDQLFRPPIEYSVPHIAFLGDYTLPDINKVFQFIQQPAMINFRIKQFIETIEKYKVKVLVCEGFPFCRQQFAHEYFRYLEECKKRGIKIVISVRDFPWDEPHNNQLQDWVLYTQNIVCKYYAEYILVHGDKKLLPLVSDRTKQANSVQIIKDIEHLVQYTGYVCDEDQPVHKQRDNNIYVSTGLNKDEAVLIFKKIAEIAHHYPDHKFIMPIANKYNSMGGRKNKNIYLVEYVPELRTKLSTCAAYITYGGYNATVEILKGKIPSILVPRQSGKKMEQFIRAFTFEPYDFYKVLTLQEFNNVKVVLDEVLNGYKPQPFKFNLKGASNTAKFLLEMHNGL
Ga0213869_100307224	F097668	N/A	ELVYEQGIALADGLSTFEYTFRNEMWLLLKNNSNQVQTLQPTQKIATFSISHRPRMVINYVEQIEDSDFKNSSAKSYIQKIKKKISPEIYNIKHGKPIIEDINYSRETIEKYKKGGIGTHGLDDYVTDVKLVQEDEIEEITGVKPSES

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213869_10030722

Overview

Ecosystem & Geography

Associated Families

Sequences