NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10023609

Scaffold Ga0213869_10023609


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10023609 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3436
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037248Metagenome / Metatranscriptome168Y
F098225Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100236092F037248AGGAGMPEGMQAATPPEPYLNRKGKQPSLLTDDKVRILLSSPEQWFIISTKDKWISGVKANIESMTQRNIAHLSDKGKFEIQQRRNKTGQIDIYCRFVPNYKEEIL
Ga0213869_100236094F098225N/AVPNSKAYPYPEIVTGEKWEVVGTVNNSPDGSTDNLNRQMTVPLDRECTECGINHSRMIRRHELGHAKWSPKTMGKLKPGVRAEAVHVLEEVRVNHLLYENKLALSEPSKCLDVIQQETMKLVYESGIAEIILMGLASKWKVPDIDTNRRYASYKYNDEWVVMSACFNMIRNDDTVTDYRKQQIIYAERIIARFFQSITNHGYGQTISYRKVQKYAEPLSAILDMFRDAPTQDEVYKPKPKSHTAPGIDESEGNAEESNELGGGSLEQRTRDDLAELLYRSTQGTGRWGEMFTHQPPLSVNLQSRLKNGRSYRPADFGYNPKYINRYCIDKKIFKQKMTALGGTILIDASGSMSFNGEDILEVMQQLPAVTIAMYNGTGDTGDLRIIAKNGKRVTEKYLDNHSGYGNVVDGPALEWLGTQPARRIWVSDMHVFGAHGDTAGFNLMADVNKIVRKYNIINLKNIEEVKEHALKLNVV
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