NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10019939

Scaffold Ga0213869_10019939


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10019939 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3804
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003051Metagenome / Metatranscriptome510Y
F010532Metagenome302N
F028971Metagenome / Metatranscriptome190Y
F031261Metagenome183Y
F098031Metagenome / Metatranscriptome104N
F100938Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1001993911F028971GAGGMIIKKDTELTPMSKEEFRAWEDYVIKYNHDNSTDQIAYEVVWNKDEYKVKLLNLKVDKEGQE
Ga0213869_100199392F098031GGAGGMKYSVELHVIQIHDVEVDATSYEEARNKAIKEWRNGYIYNDVGSPTFCKEEAKVVSFTSMPTAEEILNRKVYR
Ga0213869_100199393F031261AGGAMTRTKNYVMTVDKNSDNILEQLNKLQQVRQSVSLLNKHSTRKHYVKCQGRWGRNNPDYNRRTIPFCPLDKAIKWDVYIYQGGR
Ga0213869_100199394F100938AGGAGGMSDWLDGTKPKYIECVYETAIEFDLEELDIDYDTIDDYYVRYGTLYVEFKDGTSQSYEGNHGETDYKWAREENVLDESWNKVEGLN
Ga0213869_100199396F010532N/AMNKTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDKPMNVSEVDIIHRIEEHVSYMVSSYLNKSYEGISVD
Ga0213869_100199399F003051GAGGMKTKILKSKVVIDMSVSEYDTLFKYIGKLESMLNTLHETNDLWLSDVHNLSSLKWELIEMLDAEWNPDTYRYVKRGAK
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Institute for Fundamental Biomedical Research
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