Scaffold Ga0213869_10015125

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10015125
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4471
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008887	Metagenome / Metatranscriptome	326	Y
F033631	Metagenome	177	N
F038854	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1001512510	F038854	AGGAGG	MDNPRRIVSATILVEWNDNPKPVVLNNDMPNGLANDFDDWLTECENEENVKXVK
Ga0213869_1001512513	F033631	AGGAG	MKKYLVKVYNKVDNSYRVAMETPDLDMAEDKMTRLSNQGHLVKIDMKPNKTPKHLENLPKDKLDTLVEIFKPKLXL
Ga0213869_100151258	F008887	AGGAGG	MDRGCCNECGYKADYIIDNNNYADNGYKDLNQVPTDKMLCGVCYEEEVKNVXYRKQLRML