Scaffold Ga0213869_10011495

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10011495
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5262
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019967	Metagenome	226	N
F032444	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1001149515	F019967	AGGAG	MKKVKLESNEIELALNVAAKRFIGNVKMGKGFSYGYQGDYKKQLGDSFLGALGEVAYAKSSNSFYNGSYTDNLERYNDSDFQNNIEIRCQEKKDYNFLLIRPGEKKGKYILVIHEGDYEFSILGWFPFINDMPERLTNFGYNNRPAVYKVDIKELYKINDL
Ga0213869_100114954	F032444	N/A	MNQGKEKTMFKTKLQYVSWNDSVPGSAKAADTKKTKLENQGYILVSTQAGLFSGLMVYKNPNYKKGQ