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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021375 Open in IMG/M |
| Scaffold ID | Ga0213869_10011440 Open in IMG/M |
| Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5278 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006343 | Metagenome / Metatranscriptome | 375 | N |
| F031053 | Metagenome | 183 | Y |
| F047026 | Metagenome | 150 | Y |
| F058891 | Metagenome / Metatranscriptome | 134 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213869_100114401 | F058891 | N/A | SFAIIKERHEALSKMKASQFAGRITREEQALYQEAWSYIDPKAKVCFSCGRSPQIMSVALLNYYEANKPKRRKKK |
| Ga0213869_100114402 | F031053 | AGAAG | MKQNENHENYGLYITQNTYTMDFYCFSRDVADAYWSGEPCKKSSGKTSQEALSNYKNGVYSNK |
| Ga0213869_100114407 | F006343 | N/A | MKIELPNSWEGVTIEQFQALQKILAEKGDEYATNVAIISIMSGVPVDEIETYALKTYAKCMHTLSFLSEQLLGQVQKVVEFGGLRYDVITDVYKLNGGQYITLMHLMKDPDKVIDHLNEIMAVFLVPKKKTWYGWKKQPYDSEKHKEVAEAMLQAPMTIVQPLSAFFLSSYLKSAKHILESSVKKAEKIKKQAERKLRRLKQNTAG |
| Ga0213869_100114409 | F047026 | AGAAGG | MAIFTTFPDGEPADYNLAYNDNVWVFKTSVNTPTVRFKIVVLPENYPVEEAIGVVRIYPTTANNGNNYQTAFFDPSRFLQSYIEGYDNIEGANHNGFFTNNNTHKEYYLFVEEEDKNSQGVYRALKGSIFTKIKSVWNGVRNEIDWLDFDYTDYIVNTFSTSKKFLTDSPRTIRIDSAQSYQLSFIVNERFGANQYNIKAYSGYNGTGSLVADGVVSNNIPSQDSSSRYFRIPVGTYDIGNIDPTLYTDSLLGTTPSTALANAASYTIHLEDNTNAQTSEKVTFNINQTCSKYNEVRVHFLNRLGGYDAFNFYLKSIHQTDIKKDKYDQQHHDWTGFAYKYSKSSRGTTDYNVALSKKLTVNTDYLSEAES |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |