Scaffold Ga0213869_10011253

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10011253
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5328
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031655	Metagenome / Metatranscriptome	182	Y
F039095	Metagenome	164	N
F063568	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100112533	F063568	GAG	MENTKVSKLLLVWLWTQGHKVKEYKEAEGITTVHDKDEYKFDVSGNYGGFRVEYTHNRFSFYDGDKKLKDTDLNEFR
Ga0213869_100112536	F031655	AGG	MNFAIDIAPLAGLLVGVNYWNSEMNDDFENPKYHSLQLCFGVLALVITWATEREE
Ga0213869_100112538	F039095	N/A	MEELKDEDYRWVRGGSKSIALLWLRQKNQDLMQIANALKPQDPENEYEMDIFIDLVSIYSAIDSAIGMVEDVQQMVWEAEAKNSDLKLTIRNLTKKINAYEERFDNLNEHLK