NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10011253

Scaffold Ga0213869_10011253


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10011253 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5328
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031655Metagenome / Metatranscriptome182Y
F039095Metagenome164N
F063568Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100112533F063568GAGMENTKVSKLLLVWLWTQGHKVKEYKEAEGITTVHDKDEYKFDVSGNYGGFRVEYTHNRFSFYDGDKKLKDTDLNEFR
Ga0213869_100112536F031655AGGMNFAIDIAPLAGLLVGVNYWNSEMNDDFENPKYHSLQLCFGVLALVITWATEREE
Ga0213869_100112538F039095N/AMEELKDEDYRWVRGGSKSIALLWLRQKNQDLMQIANALKPQDPENEYEMDIFIDLVSIYSAIDSAIGMVEDVQQMVWEAEAKNSDLKLTIRNLTKKINAYEERFDNLNEHLK

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