Scaffold Ga0213869_10010964

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10010964
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5408
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002318	Metagenome / Metatranscriptome	571	Y
F005019	Metagenome	415	Y
F019967	Metagenome	226	N
F096201	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100109641	F019967	GGA	MKKVKLESNEIELALNVAAKRFIGNVKMGKGFSYGYQGDYKKQLGDSFLGALGEVAYAKSTNSFYNGSYTDNLERYNDSDFQNNIEIRCQEKKDYNFLLIRPGEKKGKYILVIHEGNYEFSILGWFPFINDMPERLTNFGYNNRPAVYKV
Ga0213869_1001096410	F096201	N/A	MKTNQPKERKNTMNTYLITNNKNSLSYTKDFTDISEARHWIINHLDLSNEWNIDQVKKLHHTEYKKNYKNYILSTIEEDSEGKAITTEQEKINYIFDRFNSEYGWNIARVGKYKAMAEWLSGLALNIEYYDDAIVDLAVKMGSIEPNPSDKIKDKIAANYWDFMANVILGFEPKKKAA
Ga0213869_100109643	F005019	AGG	MNIYGDMRTCIKCKNKADVVEKGKDYCAECWFRYFSGETIEQYEKRTNELEERRKKKYE
Ga0213869_100109648	F002318	AGGGGG	LKNKVYSVTKDLEQRNPGKKFYSFMDMEDAEIRKKEVILPLPKKYFNKIVKLIKGEK