NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10008779

Scaffold Ga0213869_10008779


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10008779 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6164
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001521Metagenome / Metatranscriptome679Y
F003976Metagenome / Metatranscriptome459Y
F008134Metagenome / Metatranscriptome338Y
F020816Metagenome / Metatranscriptome222N
F038195Metagenome166Y
F059441Metagenome134N
F083384Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100087791F020816AGGAGGMKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITKVKTWEEDDEV
Ga0213869_1000877910F083384AGGAGGMETNKLTNFVIFKDNKRLEMIKDIYINGNAFSKMNVEQREKEKNKHKIHKDNYVSVNVLSENMFIREGK
Ga0213869_1000877916F001521GAGGMKLWITEHVNEDGAAIGPYIKADTIAQANRIAIQYGLLVLGEIQELEHDDHTRKRTVH
Ga0213869_1000877918F008134AGGMAQLGSNEKPVLMSSKKNKGRLYKPSDGGKGSAPRVNIHSKQYRDNWDLIFGGNNAKKENEK
Ga0213869_100087792F003976GGAGGMSRTYNDYYFEKEDVLDTLDKLEMSVRFLNVWVNKPMGLENARYVLEKNANQEFNWFSRDMVKELVEEETYESI
Ga0213869_100087793F059441GGAGGMKTWSSTIKYTVFDMGRECETEEEYREWVKETFILDHNIYLRDDEITNIEREELYNE
Ga0213869_100087795F038195AGGAGGMKLHKDYYEYKTIPFTYFKKVANRHDFKKQWVTVRCQEDIMKQQPHNVEIRRLKKNV
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Institute for Fundamental Biomedical Research
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