NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10008105

Scaffold Ga0213869_10008105


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10008105 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6471
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000352Metagenome / Metatranscriptome1247Y
F003058Metagenome / Metatranscriptome510Y
F003647Metagenome / Metatranscriptome475Y
F005817Metagenome / Metatranscriptome389N
F023593Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000810512F003647N/AMVMCEWTLADIKNRASNKAFAKVTILTLDLETYKEDLRTGNIGGVTYEEFEQVVKGYEKELQVWNYITELIEKQ
Ga0213869_1000810513F005817N/AMRSNLLSRLKPEFKKGLEDNKLRYPSMTNDIEFLLTQIFYYDDLTVRQVLNIFVFSDMEYLDRKSFDWRYGEDVFEVENNVA
Ga0213869_1000810517F023593N/AMSKMNEIDEIAQYQADVILETLKEQVEWAIADYDLNGDDYYNLRDYTVYQTVIKLLEQVDLVDVDYYKQNTIISG
Ga0213869_1000810519F000352N/AMRNIKLTDNDCTFVHYVLRMYATQTPGLDSEDKSEIREVAAKFK
Ga0213869_100081057F003058N/AMTDKEMSKLADLIVDKIIERQKAYDEEFKADIQSMVDENTNIEFGTITQDELIIEEIDGLQERLAQLEEKEDYESARIVANKIKHLKNKYNL
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