NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10007542

Scaffold Ga0213869_10007542


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10007542 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6741
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006343Metagenome / Metatranscriptome375N
F031053Metagenome183Y
F058891Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100075422F006343N/AMKIELPNSWEGVTIEQFQALQKILAEKGDEYATNVAIISIMSGVPVDEIETYALKTYAKCMHTLSFLSEQLLGQVQKVVEFGGLRYDVITDVYKLNGGQYITLMHLMKDPDKVIDHLNEIMAVFLVPKKKTWYGWKKQPYDSEKHKEVAEAMLQAPMTIVQPLSAFFLSSYLKSAKHILESSVRKAEKIKKQAERKLRRLKQNTAG
Ga0213869_100075428F031053AGAAGMKQNEQHENYGLYITQNTFTMDFYCFSRDVADLYWSGEPCKKASGKTSQEALSNYKNGVYTNK
Ga0213869_100075429F058891AGAAGMHKKDVLLFIKERIEALSKMKASQFAGRITREEQKLYQEAWSYIDPKAKVCFSCGRSPQIMSVALLNYYEANKPKRRKKK
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