NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10007393

Scaffold Ga0213869_10007393


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10007393 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6818
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002593Metagenome / Metatranscriptome545Y
F002682Metagenome / Metatranscriptome537Y
F010275Metagenome / Metatranscriptome306Y
F024924Metagenome204N
F087763Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000739315F002682AGGMSKQIGSEEKPITFRSPIYKNTHGSKGANPRPGFYTQDYRDNWDRIFGKKKTEEKNNDND
Ga0213869_100073932F010275AGGAGMSNEIDSTVMDNIRDNVHELWVLDSRPDLEDDCLQYCYDNIDRPVPITMIEFLSIHCSQAVSTADYRQMAMESLNAQRNHYTKED
Ga0213869_100073935F087763GGAGMAQMRVKDQDLIVEQVVAKIEATELDKFKAHKDVIGIQSVINTRIDLIQQLWYTYKQYEQNIKDDIKELVELVDDFQEVNGFKKSYEYGGTKGFRLSNVSMYGSPEVPEYEIDWKLPKSQQRELETKLRLQTMSGDFDVYKLIEELTSEFSS
Ga0213869_100073936F002593GGAGMAQEKRKVTYSRTGSETTQSIEDASPMIKAVWNEAHQFGANIVRVRRDENRFGNDTGKTFNSFHHGKVSVYKQKPNPKEEDALYFARKVPVTKANTGMQILEISTNIDIQDTLDTIDDIQYYAETSFLGRLWNRIRYGTPMSITA
Ga0213869_100073938F024924AGGAGMNGKKRLNKSDRALAQNKFDQVRQAKNRIIVSFNSEEKAKRYLKSKGYRYQEVYSHKEDRALLYKNFKNSWVKLASTFNFLNDNTMEMGTVWNIEIL
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