Scaffold Ga0213869_10005741

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10005741
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7837
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029566	Metagenome	188	N
F048571	Metagenome	148	N
F052884	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000574111	F029566	AGGAG	MAHSVEQLYEKVAVLHTKAIELHRERYKTQGFYDKAKCTFLLADVRSLAREIERGLVDLDIEFSKSSIDS
Ga0213869_100057412	F048571	AGG	MEKSEYIHLLATSPWKEMQNHFDSIPVIDVKSTTKLDINTSDWVRFSIDNFDLATQKWEEPKSHYTSQANKWATINNIVGRNIHNSFELNYGMLGDGNDKLKTILGRNNIKLLGIDWDTVLVRLLVKFPGHGMAWHEDSLDSYVLKFDLSDTSKVKRYWFSIDDWQDGHVFQVSKTVLSNWKKGEAFDLPFGIGHASSNFGYRPMYSVSFTGVLDS
Ga0213869_100057418	F052884	N/A	MNNILCLGASGYLGSYLTDRFKCVTTAKRFQWSADVWRYDLAHQYDFVFLLARTCRKQYPRRDRLTMMDEVGGVVKILTAHPRSHIVFTSTKCVYGIANEEERPMTREDIGDYFERVLNGEFVNKTIDLPRRDDGMHVSLINALSDHHRIYADTKICDELLIKNCAHRHTIMRIWDII