Scaffold Ga0213869_10004550

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10004550
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8971
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011403	Metagenome / Metatranscriptome	291	Y
F011589	Metagenome / Metatranscriptome	289	Y
F067803	Metagenome / Metatranscriptome	125	Y
F095513	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100045501	F095513	N/A	YRVVQENELGYIPIRTVYNAQKVYNNVGSTIIQDVSQIQRSIYGDMTEIYSAITYGAHPTLVVDETTDQLNDGQVGAEPGSVIRVQAGLTGEPSYVYEFASPDLGAIDSIKGLVDSKIEKLSQIAMLRSEDLIKSSRSGEQIEVYDDKLAAQIRKKATNLENSEAKLWDIWFDWTNQTKPADFNVSYNRQFNKKALEHELSEINMSLNVLEKYDAMFTEGSAIRDYPTIEEAEAEARRLGGSGYHSHIREDGLETYMPFATHLEYELATGERTEADTEFKTEMRDKIRMRLSQLLSASTTNSGF
Ga0213869_100045504	F011589	GAG	MAFITVGDTVVSYAEALDVRDKDQRLFEGNEIDFTNVPDNPGSLNNYIEDLAIKSTNRINQKIRASARWREYLGYTGTGFDINSIPEFDPSNIVGRKADFTDMCCYYVLKEYLLPKIADFGNPESPEVQKIQYYDDKFNELFTELMNMFDWFDEDGDSIVEDGEKMVRFSLTRRTRGRRSTTRVR
Ga0213869_100045505	F067803	GAG	MAIRDTLKANLDVALASSNVSVSSELPYNSGGEPLYFKNMKYLYLDEDNIEKTELFNNLDNNDVIQTETGVTGYLSVDAKNPPGDIDTIVSDIITSRLAVTGQPTRDCEMTTEIDADRLLYTFNFNFITFN
Ga0213869_100045506	F011403	AGGAG	MAIINVSAGSEAVLFLGDSEANANIAGSDGLSVPRMSDITLNNSTGVFRFKTLDNTAESAVTTPATNQITLNVVVDDAAFFGTGAAVDTVVGTGLFGCSKNKTRVYFNAGFEGTDSGSKFLSGSGFISGLAPTVNMDSPVWVTPVTIEVDGDFANSSIA