Scaffold Ga0213869_10004542

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10004542
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8982
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024563	Metagenome / Metatranscriptome	205	N
F048332	Metagenome / Metatranscriptome	148	N
F077338	Metagenome / Metatranscriptome	117	Y
F086331	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000454212	F077338	GGA	MKYLAILVFVDKKILQVVNLSPSESWIEKLTHVHPMKQITYATIVQATVFFGMLGMFKVNSWIFSV
Ga0213869_100045425	F024563	AGGA	MQIIYTTKKDLIKQIESKGISPLSMNATIEDFKKYLKALNVEAKRKEVVKNVT
Ga0213869_100045427	F048332	N/A	LEFILTTLQNLEMNYLKGGNMEILKSIKLRQLRKERDLIQANKKAWINLHRKDNLDASLSRTFLAYQRAINKINLAIRNLQND
Ga0213869_100045428	F086331	N/A	MTKINKLSKEDLIKSIEKAENLLNNKRWIKQQTKFWIGVYINHLAKLRNELLKRG