Scaffold Ga0213869_10003731

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10003731
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10030
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (24.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034543	Metagenome	174	Y
F053137	Metagenome	141	N
F058891	Metagenome / Metatranscriptome	134	N
F071094	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000373111	F053137	N/A	MNEQHLKALKCMVFAQSFVEALDDFGGNRAFKHQLKNKGNAFAKEVDKFLNDTYSKGSTDTSIVNLIEGCQDAIDKLIDESVTVTE
Ga0213869_1000373114	F034543	N/A	MIKIPKISEVIQEANAKKITAYRIAKDTRLSTQTVYAYFKGERVSVRTQEEIINYINKY
Ga0213869_100037312	F058891	AGAAG	MHKKDVLLFIKERQEALSKMKASQFAGRITREEQALYQEAWSYIDPKAKVCFSCGRSPQIMSVALLNYYEANKPKRRKKK
Ga0213869_1000373124	F071094	GGA	MIIFLLTVSVCLLLLVVGLLLYIGYKVSELERTQDVIFDAAVSAEERNREIELNQEAILNAYSRQN