NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10003383

Scaffold Ga0213869_10003383


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10003383 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10608
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (21.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019650Metagenome / Metatranscriptome228N
F030151Metagenome / Metatranscriptome186Y
F068851Metagenome / Metatranscriptome124Y
F068870Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000338317F019650AGGMIEKIILYAKTLQPLLKWIKDNPDDKEIKYTVTRLIRFYSNTPKELGLPYMYSSAALQEAIKLDIDDPEEKLKWITWREQTNKSGLKDIGRKNGIFHLEHIIPISQIAKKLYELDNLDLVLPIYKILVDNFKIAWILKSEQKILDSINRSGIRTPELLTNLNIHIKGFNN
Ga0213869_1000338319F068851N/AMANADNKCKDLDVRDYWKEKEYDVKVNSLEELYSLQAKTQNMYFEKQGRKPFSEFTIGDVIDFL
Ga0213869_100033834F068870N/AMDSLTSKPSCIEDLKELVNNLTDRDVNIKNHLQCIKSILEDKRIKNDATKIKKIKQILKN
Ga0213869_100033838F030151N/AMLYFEATNIEELEIEAQKRAHEVSVFTTTAIIEALNKGADKVVVGVLSTLNLDLSVEKSGYLDALETNLVRCEEAEEYELCKESIKWINKLRE
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