Scaffold Ga0213869_10003293

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10003293
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10769
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004688	Metagenome / Metatranscriptome	428	Y
F016342	Metagenome / Metatranscriptome	248	Y
F020258	Metagenome / Metatranscriptome	225	Y
F037476	Metagenome / Metatranscriptome	168	Y
F076601	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000329321	F020258	N/A	MNIHNFKDQDTKGKALLILTYPFAIGVHWMEWRRMKKLQRMIRKWIGAACKNPQGAEAEMVKEWSDELRWIYGK
Ga0213869_1000329323	F076601	N/A	MYTTHMKAKNTGRTYEEKVKDARESLAKWNAKREAERKDNPIDWNASVKAGKAVFKKTK
Ga0213869_100032936	F004688	N/A	MPCIHMNGSDENSLRRQYNDLFCAVSDAQVKLLYDVDFHQRDYYPLGDEAWDKAFKEREEVKEAINTVYQYAKQHMHFLDYGKEPLPDED
Ga0213869_100032938	F037476	N/A	MNEPKTIKLTGVFPKTFRVSKCETGRNDCNFEYTDTRKKVFFEVCLHGAVELHEHFTELGYTELAPKLEFPTWHPNYKKS
Ga0213869_100032939	F016342	N/A	MKARDYYALKDEGILKAVQKKEIIKQSSQENFGMYDVMPVNNARIVSEACDKFFERKGIRYGSAWFHDRLDRKKKIQQAKDERTKNN