Scaffold Ga0213869_10003190

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10003190
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11000
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (93.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F019643	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000319017	F000325	AGGAG	MKTAKGNDKLGKENCIVVSRPVGDTCPPTCEFLGNGCYAEQLEKIYPGVRPAGMQNLITEKNKIRAMLINAEKKGNDLRWHERGDFYKNGSELDIEYVDNILWACRSILAEGGKLPKMWAYTHIYDPKLSRILGKYITMYASVHNHDDVAKAKAAGFELFAWCDSDEKIATKRPRGKKKADQWRSDLPKLVVLGDDKYITCPEIRRGRGVVTCTKSKNSVNCQLCVQGLANVLFPSH
Ga0213869_1000319019	F019643	GGAG	MAKYYIKTGTLEIIFSTDKEPYDACRTAIRECNSNDELDEYMYLDERGYRDYTTADTTTYVIDTKQIADKEGIDITYD