Scaffold Ga0213869

Basic Information
Taxon OID	3300021375 Open in IMG/M
Scaffold ID	Ga0213869_10002872 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021375 Open in IMG/M

Scaffold ID

Ga0213869_10002872 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11729
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (100.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11729

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (100.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014905	Metagenome	259	Y
F017486	Metagenome / Metatranscriptome	240	N
F048584	Metagenome	148	N
F049548	Metagenome	146	Y
F058952	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000287210	F048584	GGAG	MQDYDLTQYCNEIADEIARDASGIEQAMDWAHESADGSEYVIYYAKAHTICQNCNIEQGEDFFSECYGGEHGKSYDEIACIMAYGEINARICARLWQIFEEREEEAA
Ga0213869_1000287218	F058952	GGAG	MTNDTKPSEKDIALWERIKQEMLDHADVVSGFTDDEREALNELRWTSMSMSEDVNYLMDFCYSDVIDFCRAADFLCEEYSWNTSENEDKRDIGKKSLALAEALRSDAGDGPHLSYGQAKDFGGIYPRITGLLHTKPNKYQMERFAECGITWEGEVDEH
Ga0213869_1000287220	F049548	AGGAG	MTEREEQIAQATQDFLMALPDKMKNGHLGSVICTMFEAFGLIHETRVDICEGVLNVMLEHDMRDDERAAQAADEFLARAAAKARK
Ga0213869_1000287222	F017486	GAGG	MNKIIITNAHAHGFAFACDTETQGQVFIPVHIADGFDLAPGDEINAVLVPNYQDKSDKGTPWQAVKLQRPVEVVQVTSKEHLNEWYEGLSEAPEDEVCEKAIIDKSQTLNNEALDANLLDFILAAGGYHTTAELADYFELDHKTAGNAAQRLFNSGKIAKADVFNRVGQQRPTMILWAAAAKTFIEVV
Ga0213869_100028726	F014905	AGG	MKPVPFHKLSPKMKNIRMNQWIKSYIGRGLSLEDAQHAARWRAGHWKLNARMEKVLAEIEDV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213869_10002872

Overview

Ecosystem & Geography

Associated Families

Sequences