NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10002738

Scaffold Ga0213869_10002738


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10002738 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12041
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030568Metagenome185N
F053559Metagenome / Metatranscriptome141N
F058458Metagenome135N
F071655Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000273812F053559AGGAGMLLKAKTRLEFDNSWVKQLKFVEHTDQDLAGHVDAISIKSESGSVFDFYRSNPLENPDDFKYTALYHKIPQVKKLTDYFQLQTTRVRIHRQLPGQEIPLHTDGNNTAVKDKNDYMIRSITALTASKDFRYNFIDTENKHRVQWLRQGETMFFDPDLIAHGMLNESKTETRYALVQIFKLYPVTDWARDFISTKKVVKI
Ga0213869_1000273817F030568GGAMTTSMRWFANQWQTQEVDETVVNRVLAAKNVLDIGCGHNPYKKFATGKFTGIDVYIDTADEHMDFLNFRTQEKYDLIIAYGVFHFHSLDLIDIQIKKAMKLLTPDGVLCMKVNPNCPNFDGSILPWYNKWTKSLAYHYGEVYNKKVTNMRESTRGRFKWEYE
Ga0213869_100027382F058458GGAMSKIQEKITVFMDKLQNMMENNIHLTDFPAVVTVHMQASLYRSHMNDEDKDYYDAVQWWLEEYPEKSWNVQ
Ga0213869_100027386F071655AGGAGMAKLNKTWVQAALELSQVDKDKLDWWHKKIPGASSNRLRGFINNLCGADNVNYLEIGVYKGSTIIAAVTNNPKTKAWGIENSSYDFRQTFPDQIPEGSPCWPSMIRDLNENLKKWSTHLNYVPDAITIIEDSFQNVDYSKLPTFNVCYLDIEKLNPVIYDEFFTTVYPKLDKECVLIVSGVTNPIFMEELNKALLRHDESFTIDYEFLKVSGAGSDSRNYWNGIRILGLKRKVKAVVKAIVTKKPAPKPTKEA
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