Scaffold Ga0213869_10002017

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213869_10002017

Scaffold Ga0213869_10002017

Overview

Basic Information
Taxon OID	3300021375 Open in IMG/M
Scaffold ID	Ga0213869_10002017 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	14491
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019852	Metagenome / Metatranscriptome	227	Y
F105295	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000201712	F019852	AGGAG	MPVKFKPSQKTFVKGQGTRIEHFYIKNAPKQELIDYINKGQKPKVKQKCRNELTRRGVEIVWVKPESE
Ga0213869_1000201714	F105295	AGGA	MVDSVKNYGIAGASTTIELGKQGAVIDASDSAIISLKDKDGALESIAIGQGTDATHAVTQTQLDGATAQKLQYIKTSVNYNSGTVAIGTAAANTRVQSVVVEKGAGNWTDHNDTTEIVVGDSGDTDRLFNGFDPDGGQFKFENDHLYESETAISAIVTQGGASAGSATVAVYYTGTIS

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