Scaffold Ga0213869_10001655

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10001655
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16255
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F008882	Metagenome / Metatranscriptome	326	N
F013295	Metagenome	272	N
F038638	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000165524	F038638	GGGGG	MSYEIAEYKYINHMKETYSLRGDIEYPSRTRSHQDKNGNWVLVSPQGLKMAKIFKNGDII
Ga0213869_1000165526	F004343	GAGG	MTQHREMIEEARRLLKTERENIPSMSKNFGKDYWLLTYPCGKIIKTYEDKRKKDVIVQESHSGGKL
Ga0213869_1000165529	F013295	AGGGGG	MKINNLTPKQFARREIIKYLRDLFDNPQKYIQGFDDLTHRQQEEILRFVSLDEHRIDKLLNLPMGEE
Ga0213869_1000165530	F008882	GAGG	MSIKRYNFNKPKINRQELELLNFFLAHTDDNPLINPKALELFKANGYSAKNYQDLVNKIKTILKTYKTKGEL