Scaffold Ga0213869_10001609

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213869_10001609

Scaffold Ga0213869_10001609

Overview

Basic Information
Taxon OID	3300021375 Open in IMG/M
Scaffold ID	Ga0213869_10001609 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16602
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (68.97%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060052	Metagenome	133	Y
F105365	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100016095	F105365	AGGAG	MLNYNLNNPTPFIKKYIQKNNHIINKFADLLFSDPKTTSSPQWNSLPLLTTKLAFELSLYKLENGRDFYL
Ga0213869_100016096	F060052	AGGAG	MSKLQQHYINFQSQPTIPHKVLYLQKHQNELSQFNINVPNLITAWTTNQWPWNQPKPDHN

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