NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10001544

Scaffold Ga0213869_10001544


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10001544 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17042
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064880Metagenome128N
F085895Metagenome / Metatranscriptome111N
F092352Metagenome / Metatranscriptome107N
F094097Metagenome / Metatranscriptome106N
F103549Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000154412F094097N/AMTKLSRQENQGIGLPLNTSLTTIIREVEEKKEVQMALSGAMYGVANMYSDVDIKALTATMDAFYREFQYEPLSVFIDVINDFKTGKVKVFGRITPTQIRESIMDKLDKIARERENAHLDRKGDAGTRSTLTLREALAKVTTQK
Ga0213869_1000154415F085895N/AMNVDEALKLLEAKVEDDIHDLTPKDRLLFWANLLEFKKAKIQRIPFLVPENDAKIIIEYEDYKTEAHASISKPLDKPEED
Ga0213869_1000154417F064880AGGGGGMKRFKIHYDDDIIGGQIPDSWEELTVKQWAALRPNVSDLELLSVLSGIDLSYLENTRADLSPAIEHVYQSIKDMPEDLNHLARKPLTILGHQIKFPKDINFARYGQKAMVKNAIQGAEDMREIVSDVIAIYAQPSIDGKFDSAKLDPIKKAIDNLPIIMAWPWAVFFLKKLSALRRTYLSDWKQYQAQQNRQK
Ga0213869_1000154419F092352N/AMNIIATTLKSIIEAQGLTYLRAANPNDLNELVGSYDLSNGVGVYANLPTVDNITYSQNSNVLMEYGVEVYYLKLSTGTDDTATQIDVILDALKPKVDGMIDKLNASNIIALSSFIDGYELEAIESINITSEVLSGWKLSFSLPIFRDTFECA
Ga0213869_100015446F103549N/AMSCAGIFEGATVSCADPLAVGIEQRLFLANLEDVASFTFDGTETNMVTGITMETGKTFFEFEGLKQSISCQSEFVPKPFSTAYKHTVDFSVFNVTASQRRNLEAMVFQPQVAITFGPNDSSLGNGAFEIHGINAGLEVVTNIRIPADNETGGAYRIQLATPDAGGIESALPSVFWTDPSTGTYASALTALVALKS
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