Scaffold Ga0213869_10001287

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10001287
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19008
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (16.13%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025968	Metagenome / Metatranscriptome	199	Y
F028498	Metagenome / Metatranscriptome	191	N
F033811	Metagenome / Metatranscriptome	176	N
F054452	Metagenome / Metatranscriptome	140	N
F066285	Metagenome / Metatranscriptome	127	N
F079390	Metagenome / Metatranscriptome	116	N
F103078	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000128714	F033811	GGAG	MKLFCNIAVMETNIAQAFIEAIDYSHVKHIIRSNKSIKAHWGGVTPSIADLKRVIKNMWARVSKHESAEDCVNGIVMIKDGDRVRVDFLYLSYSSQTEESSQHSEEECLQDSEREIKSS
Ga0213869_1000128715	F066285	N/A	MDKKSWNVVYFNRPDVHKNLVWSDGKRYFDGFLGSDNSVYRKTSGTPVEEPNAVYWTEKPFNASDDQE
Ga0213869_1000128717	F054452	N/A	MTDELKMSLLNELMFGLDVWNHEHHEEIMFLHDFGLVKVYDEDLQFTATTEEGVLELKRLIKLYFVFLN
Ga0213869_100012872	F028498	N/A	MADEGGIFTDESRYDVGTMLTVLNAARAFAITEMYRKNTRVHPNFIQRVYPEYKENLQQDDCYTLFEIPRTVEINDKMDGLMYVGSIKGDEAFWKVRTRMQLSSRRNHRIHKLAQKKHIHFLYDTTRGYLEIYDPKVKYPLVEGIFEDPTSVPQFSFDHDEYPITNDAMKRIEDLVRRGTIVDSMRMPINKISNSQEDSNIKRDVQTK
Ga0213869_1000128720	F079390	N/A	MDKPKNFKELKKRLLPFINYEQEVQLSKEAKVQNVGNMINSHVKILEANPGNAGYMPYYDRLVMLLTILESGWE
Ga0213869_1000128728	F025968	N/A	MIAPQEHVERVLERCFEVYPPKGRKHRKFFKNLVKEGSMPESMASMITKIIEDPNCVYIVKADGTLKILD
Ga0213869_100012875	F103078	N/A	MEREIAVIKPKGVNHIKQAVTLTATYSLKGRNISLNQYGEVKPGNLTTSRGDIRFAGELATESKIFGDSVEEVEDQIDFWMNHPMVEDVNGKGKDNSRFTIEVIAATKDKKRAKTVSVNRVVSTIYGMSEAERKDVMYFFKQDPRDMNDDDITLELVDIEGGLLLREPNTSRFIETFGSLNKSSVAKKVEMLVYVNKGIVSGFVTEDADKFYIGDVLIGKDEDDIALFFKDNPQMYDNLVRSLADGGDDTAFNELNEAEDDDITPAEKRAHFTKLYKKYKLKGKFPADLDKAIERIHAYEEENGIELSE