NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10001182

Scaffold Ga0213869_10001182


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10001182 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19898
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (78.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024675Metagenome205N
F060822Metagenome / Metatranscriptome132N
F062682Metagenome / Metatranscriptome130N
F067644Metagenome / Metatranscriptome125N
F072524Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000118224F060822AGGAGMAKKKKKENHEDCGYEVDSINNVYMFHNIKTNVHLFINAIDLEDAMTQFDLCDFAFRKEWKVFLETGHQPS
Ga0213869_1000118247F024675AGGAGGMRKYNQYTLENHFKILEIQTGRKNPCDIMEFLEEEYYSQSKKGYIKYKNMDITHLIRVMLNASADVEDNRLEVIRLRKKISKLTKVLEG
Ga0213869_1000118248F067644AGGAGMFKKEMSIKEFIEQPEIKTLIEKGMMTVNAIDEQEEIIDENVDEFVDEINKTGKLI
Ga0213869_1000118254F072524N/AMTIKMAKNGTALEYFTIKVDSGFSVEELANLILGWESDIEKIKKIKSYSKLMTLAKKQLIDKGLIFLECAWEHLEYIEDFENVHKQVMEHIKDVEPTKYLDKTTEEIKQIQSEVA
Ga0213869_100011828F062682N/AMTVAKIYILTIMLCSVGQPQCVLPQVISEHNTHYDCVKKGMGDGYEILFERDLTKQQINKSQLYVKFSCVAKDIIES
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