Scaffold Ga0213869_10000534

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10000534
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30876
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (8.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F006666	Metagenome / Metatranscriptome	367	Y
F020206	Metagenome / Metatranscriptome	225	Y
F030805	Metagenome / Metatranscriptome	184	Y
F055007	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000053414	F020206	N/A	MALDIKKQNKTYEFSNSSVSKIIASKAIALDIIDRDYLDNAAAVAAGLSKGDLYHNAGDLKVVVN
Ga0213869_1000053424	F006666	N/A	MNPKSHKDIKEGIADEVGVHSSVVDEFITFYYSKLRKKLSNLDYPRIHVDGLGTFYLRKNKLENAIKKNKSILGNLAKRTYVGFAKSQEINTNLEQMESALKQMEKDILNKKEFNNGK
Ga0213869_1000053425	F004866	GAG	MAIVNKVDLKMKVDIDLSIQYQIITYCFFNDISIGNSDLKFLAELSKNKNIELTKFCLKLVEDKIFKSPQSARNAISKAERKKLVVKKGNNKKTISLEKNINVQIEGLVLLDYKILGYESKKS
Ga0213869_1000053434	F030805	N/A	MDKKIVGLAGTLLLGVAGWLVTSVYSIQVDTQIIKEKIEKVYADNCPYCVHAAHSSIAEHPLLAPTIKHAHQHVGKEIVKVNE
Ga0213869_100005349	F055007	N/A	MANCAHCNKVFTCGCQKASLGNGVIVCKQCKAKAEANVSTSRDLNLELARQQIQDLKNR