Scaffold Ga0213869_10000453

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10000453
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33953
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (25.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005132	Metagenome / Metatranscriptome	411	Y
F014505	Metagenome / Metatranscriptome	262	Y
F016593	Metagenome / Metatranscriptome	246	Y
F016957	Metagenome / Metatranscriptome	243	N
F024891	Metagenome / Metatranscriptome	204	Y
F031874	Metagenome / Metatranscriptome	181	N
F052949	Metagenome / Metatranscriptome	142	N
F055664	Metagenome / Metatranscriptome	138	N
F083262	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100004531	F005132	N/A	MVDVIFIDDNYLYQNFPLPKRMDRGALLALIQLEQFTSIQDLLGTCLYDDLEAKVLAETLDVAEQGLFKLVKYTLAMYSAKAAISILRTATATTKAEEQKQDQYILDTISTTVDSKLSYINKRITNYILDNAAIKAIATADGCDNDLFNEEDSYQGD
Ga0213869_1000045313	F024891	N/A	MIIVEENTTASIKMYLRDFTTESFEIEITSEDQRKEVVDTTISGTWDDFRKVFSFSYDVSALVAENFYIIKIWEVGKVKLLSQDRMYIIPSGSDVATYQPKLATTEKTMDNEFKIYGE
Ga0213869_1000045328	F055664	N/A	MESKNTSSQILVNRKNLEMFIHILTQVHMRGQLSADEQAFVGKFVDLPAAPVKANRSQRRLNQKMINQIIREERKRNLEE
Ga0213869_100004533	F016593	N/A	MKRLKTGVVNTLSFVKLSTFTVNSFDVTLEKVVGTGSLTITNLTDLNNLDSCKDFIQINIDLISNDIEGGEYHLSITNQGSTYTYLTEVQDYTTTQTGTGIYGSTVRFTDL
Ga0213869_1000045334	F016957	GAG	MQLRNYLKDKRKLTESRTKVCVEVGKTGEALFKEITGALKSNLEDDKKHIDFYWGEKRVDVKGLKKMHLSGYILLEFVNVWGGDGWCSKKSKADFIAFQFPDAFYVFRKKHLRVRAIELCEPFYKDKVERRNYIPYDDALHKWVGRWNAQDVFTYLKFEDVEDLVFEVLPYTIKE
Ga0213869_1000045335	F014505	N/A	VGNIENFYRENFKRLTGFIKQYTDGSYEIASDIVQMVFLRLLELESEGRTNFYEEDSLNFFYVYRSCINTALKYQRTKKRINKVSIEDMTHDQIEFEEYPEQKAAMEKLINYMEEELDEFHWYDAKMMRIHMNGTSMNKLHRDSEIGLTSIKNTIKNGKARIYQKIKEDFQDFQNGDFDK
Ga0213869_100004534	F052949	N/A	MKGNIFISVPASDISNALPTSITRYDWVENTYNEEGEVESSTTIHPTWEQFGSRYSGLFGSPVSVADVVVYEIEASWLDSEVSALIALGDGQSAPNYTVYTNAEVRQFIADNTAAEL
Ga0213869_1000045344	F083262	AGCAG	MRDPNIDRYLHKMAMLYQNLGLESTPEERIYAKEEEHRYLGCIAEIDSEYAQRLGYD
Ga0213869_1000045350	F031874	N/A	MVKRCLNNLKEIFLYADSQPTEIMLGMLNFILLLPATMIELGWIPIYQITGIFVGGYQLFAVARQNIAMRRTASFLSFVVFTMTIVLYGSCGYFWRSASHWGWVVLWLSSLSSVKRVTTEYYHRKWNNKV