NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10000348

Scaffold Ga0213869_10000348


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10000348 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38243
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (65.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025262Metagenome202Y
F052625Metagenome / Metatranscriptome142Y
F092019Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000034811F052625GGAGGMSPEVALLLDAWDTVKAYIPAKERVHVAEELVRTFEDNVDISEAEDHANEFDSVMKAALISHFDIGLEDDEDEDWD
Ga0213869_1000034829F092019AGGAGMENYIIFLVFILANSYFMYKVGENAGKFSGMISITQFFKQKNVLKDKNSILGFNNWPEPVKILYEAPDPELFKD
Ga0213869_1000034841F025262N/AMSKGEIIDFVILRITTELDKFQRTKTIPHTLLEGAIEIDEVRDVYYEKLSPKYQKIFDKLFKEYHQNIGENIESLKIAMKKDYARVVNNMATEHDSFRFKQVMNSYRSGINPLRALFYQTRDIVRRYNPDHPYHYWLIDLVTDLEFNNIILDALGKDISKLERIIKRYYFPLVGHGDGIPLEMFHAKQQLKDFRHYYMFFRNLKAWVPDE

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