Scaffold Ga0213869_10000331

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10000331
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39094
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (25.93%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013783	Metagenome / Metatranscriptome	268	Y
F017335	Metagenome / Metatranscriptome	241	Y
F056630	Metagenome / Metatranscriptome	137	Y
F076611	Metagenome	118	Y
F105240	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000033117	F017335	N/A	MNIRSLTLKNKLTDDKTGEQYYDLTAASFKYKRELGVKALHYVTQDQVGRIDKISTTYFGSTQFVDAICVINNIFNPFVIQEGDILAIPQLKDENLVYARPKTATRPSASLAQYVDTGRQSEIDQSRIQRLIQKAKTKKTGVKAPIPPNMLQQGQAAKVFEGGKIKLGANLPSRNSTNIN
Ga0213869_100003312	F076611	N/A	MAENLLDKASYSLIRTNPKLTGNVKIVSDGIDIYLESFSANTRLSSQKFKAFKVDGTSTYDQDVFKFFDNGKFPKEAAYEIFQEYEDDAVLSNYRNQYEMFYCAGTRSVASESYSQSLGTFAPLWLNEQIPNYFVIFRLDNPAAVNNFRAATENADTANAQTSVNFNKNVLENCTAIKTFDLTQGTALGSYIRNYRNQENFPEVPLNMTWRRDEPMLWNGISYSNGGFTSSGNFAYEDMVTKDSTIIQDEYLFTQGFQNNGILLANLLNMEFLFDDPTAKDYSINRYFGMYVNDIEEGKFDISGEAFYKGTNIEKSQQPTITSITEVSQFLNTPFKLTNENGILLYLDPDKTEVITGLPTPERVNEVESIFYVKDKEDDFHTIKKGSTWDKDQIRLFDTEVDISLFTGYKEPDTFANASIISRAGVAQMYIKILDNVQDGSSIAFYDGSEFTGQIFANSTLAPTPGKSFERFFNPNGTIQEVAQSIASAINKGISENDRFFVATCNDSTVYVKSRFSGSRFNRLNFKLDNQYPEFFDQTETYPLTSEVKLDGHFVGGNDVKNSLLKVTLGDQDRFTKGDYVQTTGNYAVIGDWVPYTDEPIYNGLREIIGYTDIDKYAIITCNDNQIMVTRSGQVALYSDYKPSFGRFSFFEVKDFDFDFYSTLYSQEGELDFEYNEYNQTVAGAVPLKYEGVSSNPEIRSFYDNGGFYNLIGLVGDAEKQNPDEQYIKSEYVRLEENFLTSQAAISRIAPYINKWAWVNNGKDVRNHPYRLNANEAFGLNNFAPSKWDKIQEASGYTHEWYYLSEFPNYFTKDAIEKSWSYIDKAPRDNTQANFATGQAFVPGTFQNVIKDYFNDYFVVQKFTTRGITEIDRQLRYGRLNGGDEKNFSETFLRGVRIIAKNKAIGTEKADFNARSLSYVRDGEFNDYRFSVMLVPNLNSDGRTPDPNIPEFQVKFIKNEKWKTVVMLISMAYIDKCLQPDINSTSIIDRTTLYSLNSSYVTLSDCSPRILSNGKYDYEKTSLRGAVSFATSTQDSNGIFTIRFQPALDGTLPELVNDVRILEDGSYGSIKWRIGIGTPAQQSFEIKGIQGVIDNSTLTATTVTKTEGGVTTNVSLPIGSPPNNALRSAQYDISQGGYQQFDNRLTAAAFGNIFDSVNQGNPSIIYETIAADGSQIKNKDGSLAQTFGIELRAQSDILKSIYVGVLPDPAKPTAFNLADVIGYDLSLQKTPRITPIARHAGYYEPYALPLLSFRDPYQNLDFEEVTGGTGSVLIPDAAYKIKVMELCKYKNAQFNSSDPEFGQIQNFFYHKVNEQDPSTVLELSRESAFNSLYPLINEIGIDYRDFYMFSSNWEPSYFIKSIDKSAIEKVIGTRSMFERKSFFGSKYLKVPETIVLETFKPDPFIKAAIRQPSLISGTFMYQDQPAVSISKRSIKSEGVLNTRAIKKKQSAPVETFYLFNQKRLMEYLFTPIKEQFLLYIKDEFGYGDLETLDDDVNQYIKENILKLYKIEKVDFYTLASRTKGGSTYTTAELTNEEKISKGLTINNNVASKTLNTNPFDLRLIYNKRTGFSESYGFSVTIVKK
Ga0213869_1000033123	F056630	N/A	MQKDNIEETPQEEVQELKYYQWIKGDQSGSVVTIKEEGPDWITFNEGGRLSTELRSEFIQELDADIAGEFINTPNSTVDPLNQSATPVDPITKSDPIIPALDTTPSPIRVLFDKQKKNNKVKLLLEFPVNIPTKGVYELMSTSFDKEEVNEQLQSFILDQLSEDEILDCLHNSVQSLIESKYKGE
Ga0213869_1000033125	F013783	AGTAG	LILEGITFKLALDFFTFLKKNKITSTSIKVDFFNRVKHEYIDFADVAAMEKYYNKNYKPLDNCNLGDLVSISFFLAASDLYDFSTEFKAIDVTNNLKLETGSAYDRQRNSGRQVFIDRQIQLIKNAVTDYVKYYSELKYIYVTGIYSPCYAVPGWSENTWYLKSFREAFTSVRDTSEFPYNDVKIEEYPPN
Ga0213869_100003315	F105240	N/A	MAISVTEILGTDSLSGSRLVINDNFNVLASEINAMETYFAPTAGTITNLNNLSTEALRVGLSTILLDINASTFDILTNVKMTGNLNLNGGAIFRNDTNPTPLNDTTAGAGMAINVGNSTAIPPYSINRCGNTDITNTLALTLYSGSIGQEIFFICTEGSGSVQIQGISSNLVTTGTNDYITLNAVGESVHLLAIDNGSGVPVWYIVGGQGYVLS