Scaffold Ga0213869_10000301

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10000301
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40982
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (69.62%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031665	Metagenome / Metatranscriptome	182	Y
F042029	Metagenome / Metatranscriptome	159	Y
F068146	Metagenome / Metatranscriptome	125	N
F070574	Metagenome / Metatranscriptome	123	N
F096078	Metagenome / Metatranscriptome	105	Y
F097663	Metagenome	104	N
F103920	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100003012	F097663	N/A	MENNITVLPTETVFYRYFDTRLKIVKIPRNFHFKYDKFDSRARLQYRVVKIYRSKHEYDCNLYTSNTEIVQDVLDNFEVEEITQPLNETHRELLHKRDRKVVIRNKLWFNRYKHKISAWHNWDRNTSREESIKMIHWVYEHFPKGENRVVSTSYGSYFGTVNRLAQPPTIFTNSEETMMLYKLAYSDMLKMTMETCITLQELDN
Ga0213869_1000030126	F070574	N/A	MKKTIIAAALLVALTGTAQADNYDNTSISMAAESATMGISLSTNDTSRSIDVYTMGRALDFGAGVSDNGTNRDYSLSAGRTMDIVNVGPVGTYVDGEVEYNWGDTFTKSEMHFTPTVGGKMDLGLIAPYAEVNYLLKSVEGDFTSIDKVTPTMTFGTKVALGTSTSLNAKLTNSLNSDWESTDKEVSVGLTVKF
Ga0213869_1000030130	F031665	N/A	MLEQEALEFSQFLEPLIGLGITAIIVLWFKEAVGDFVASIRWKMKPGFEPGDVVYLDGEKATIISIGMRETIFEIDNGRGKVWRYIYNTRIPTHRLEKVIGKAHKK
Ga0213869_1000030132	F096078	N/A	MSKVHLLSEIITKLQNFSTQDEKLELLHTYHKEPILKRIITIAYNPWIDFGMQDFVPRRHGKQFGMGLTKFLHLLTDIIDEKYDEKEKNFSCQMAMNHIDERDAGLFLSLLKQELDLGLEPETINAVWPGLIMVYPLSTPTVADYKTFHKYPAAVQPISRGLRVNVIVHKGIVSYKDKEGNDIEGWNIYDEQFVNLAQNNSTVFDGHAVVANGITIVETDNQKVLEADSENIKFVFWDIIRYDGFVKGEDTRIGYNWRHNGLEHMIILAFDKNKTPCYDIVKADLVGSDEQLELTVKKFANKCVIKRLDGTWIRGEDPTQVIYES
Ga0213869_1000030146	F068146	N/A	MKIDNSSYTVTPPDLYMTEHGISILISSTNNELIIPVKELFEKFIATSIVFLVQNKKTNSETLPWMWNVSKTCDFMIIDVDTCAWEDIMAGLLKSKEEENTVLFYSDKYKRRETVKLINATGTNLVVRSLADINNYIKLQMSPEYFNES
Ga0213869_1000030161	F103920	AGGA	MPTIKDDNNVVLFSDPFKVYLFKDKQRVKLSFKITDYVVINREFKQEDFEYILAHWKEEDGVEGNIRDIDNNKIWWYHSECTPRPECAPADFVGINFNRYSFRFSVKDMESLENTYFHQKNNKMHWD
Ga0213869_1000030162	F042029	AGGA	MNTLYLICSHSCLSQMEVPYLLNNSPMLHGESQAGEHWATYELDGKEIDHEPGQLGKIRVHDDYWNISDEDREWYNYNVRNTMEISTEQLDGLLNLIKDKSISVLLHAQNYQDIWKWSRNLPVLLIKTSVDNWDGDIVSWAAREYNYLMEDDRNANYSDDDHSWPGIETIVDNFIAKKKFNNGIYNETEPYNHGDISLYQSQWSTITGLKTLWDSVGIEAPDQEWIHKYYDDFQSHQEIDRALAKELTDAYNKRR