Scaffold Ga0213869_10000285

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10000285
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42259
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (80.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002223	Metagenome / Metatranscriptome	581	Y
F009293	Metagenome / Metatranscriptome	320	Y
F049949	Metagenome / Metatranscriptome	146	N
F058462	Metagenome / Metatranscriptome	135	Y
F069335	Metagenome / Metatranscriptome	124	N
F090893	Metagenome / Metatranscriptome	108	N
F094411	Metagenome / Metatranscriptome	106	N
F099879	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_100002851	F069335	AGG	MIKGQKDWDYQFVSDCEIVNVFIPKNTHLAEYQTLKQKLLLLQQVECDNHLTSSIVNLYNTSSIEWIEHVRKMGHKYVAFWFDGCWPKTDGIEKKILTYINRLEKKDWITAVHPKYVDSLMLLNIDEFIAWPAKAPNFGKYDFWAENWLGDSTVELSKTIERNIVVGAPKTDPVNFLNGLMGKKYTDHTIARGARVIIKRKNIPSSPIYFVNTEPSSPTVADPIKNTIFKQYVGA
Ga0213869_1000028512	F009293	GGAG	MTRIAKDIIAGNDFIVNVFDAKIQDLEDNFKLYEAFESGWPVVIKNLTIPKLDYEYYDDLPDWTIPDNKWIMPWYNSHIKKRDRLRDERNWSEEQIDLFHKKHKQSQEGWNEIFDMLFPHYKTTERMLSHRYNTLVENKLHLDELDEQHTGNEQQIRMFVQLDKKRPRVLSFGPDLEKMYYDYKDEFNLGELDKNNIHTFITEMRNKCVWNEQQWDQFHHPLHYITFNPGDIWFFNAQWITHQIVFGTKLQCFEADILNESLIKPELCMVERIKNL
Ga0213869_1000028518	F090893	AGGA	MPIERKDRSFDLIFDQVSMDHVPAEYIKEVRVDLSTGERITLTKDDLQMIKNKSADEIIKALTVDTMSNISLKLDYTAIKSDVIRGVTGFLGKHFDDK
Ga0213869_1000028521	F049949	N/A	VVDTTTNLLYNNTIMGMVKVKKETNNRIKLVNNGGSLSETDLQLIAGTELVMDMMRNRVVVVTNNNDIAWNDLMTDVVGLYHIRPLDKSKQIYQLWFELKDDIAQFNKNLYVSKLSNTAHVPA
Ga0213869_1000028533	F099879	AGGA	MANKEKKVEVPETIIVHCTDNDQDVEVTYVSQHNGIIRTDLQGMPLYFKHHRANIYVGNMLGREFVMKL
Ga0213869_1000028534	F094411	GAG	MGTQSQEIQIIQTKLISLMERNHLKVKEVFKNNHTLRLTKYGKNLLSKQFNAYQFESPKMSANNLILLLRKMKYPYYVDKDIIVLFTEKDAFLTKLAGAQGWLDGK
Ga0213869_1000028557	F002223	GGA	MKKVTNSKWIIEVQENGETKELFIEFPPEALSQVGWDTGDTLIWEELDHGAWRITKAKD
Ga0213869_100002857	F058462	AGG	MNDNPIEITSRKYPIIANMIFDGIGQENCEDIIWQNVIDTVSEIEQNEIGVSVTQSYQYTKLNDEPTIITRWQGIKTTNGSEFRIGLGTGKSADKNTPPIMSGNFKTGVQVNSTLSIESIKLGCIDGKLAVEKDGRWYAIQIGERIE