NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10000175

Scaffold Ga0213869_10000175


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10000175 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51810
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)67 (77.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002902Metagenome / Metatranscriptome522Y
F007414Metagenome / Metatranscriptome351Y
F027691Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000017528F002902AGGAGMAVITNNAAAIAGNGVGPRTRIINLAKTNMTQAELDAALIFIAQGGTAGTDDAHTVAGVSVLTENGVFTSGTTDAVQVAIQGTGAFTADANYGIGTTGVASTLIADIAIVS
Ga0213869_1000017539F007414AGGAGMATMLFNGLVSLLGNPLPTRKFEKEMLTYAKTEYGNDWRYAYHYMLTHEGRGPRAGVYN
Ga0213869_1000017580F027691N/AMLAVLAGLTIATGTLADESKTLEQRVADLEKSAPSLPSGLFINGEIEMYYDEDTYTSGIDSRAEIITGLQSDVEAGPIDWAGGSARFDSHYSLNTALNNTVVEKQMGLGIGNTRLYLGETDAQRLGFAKTSKIGVPLVITESNSRIDHNEKVVLTFGGWDNNNEFAFDKHAMSKDMPVGASIGYDANTEMLYAGVTANLMGLAEVSYMQIGDKDDITGDNNQQGYAIGTSLYRFDIPVVLGVEMWDDKNTGTYTKENRMDYGAMYGLTDEVTLGYHRVENDDIGTNGDYLSAVYTQGPIEMGAYYHMTESQNLGTGAVTQNDDSIKASIKYKF
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