Scaffold Ga0213869_10000171

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10000171
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52340
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (62.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040851	Metagenome / Metatranscriptome	161	N
F046976	Metagenome / Metatranscriptome	150	N
F056670	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_1000017119	F040851	N/A	VNSVKCIRLDTGEVLIGFVEKKWNGDYIISEAQVCVMEVKDGTMEVNLAPWIPFAKEYTFTINSGLIQTVFEAKPQLETNFKVATGNNLQRGKVRK
Ga0213869_100001715	F046976	AGGAG	MRNQYVITTQNVEEYGTNFHKFKGGSDYVIGFDVETLVYEENAYGEGEHSYYHSPSLTEASAAALVMKHVNRYNGLRGSFDYITSIEVQEGDFLSDEIDNPTWVGDVSKLIEELESHEVS
Ga0213869_1000017153	F056670	AGGAG	MEMIGTINIDKFQDAIQQVGKGPCVEFNCPRQKACGEEEVECKAFRFWVNNDSYTTMRKGQKTSIAIDMERLLKEIE