NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10000120

Scaffold Ga0213869_10000120


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10000120 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61419
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042025Metagenome / Metatranscriptome159Y
F069361Metagenome / Metatranscriptome124N
F080496Metagenome / Metatranscriptome115N
F103922Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000012028F042025N/AMYEGLIQQMPVVLLDQWKSPTPSPNNDLELMEDIMQNGILEPIILGVGVYSRQVRLDTGNHRIYLAPRLGMTHLPVVARVWNYCTFTNGNGDHSFLCPDISVKKQWLEEEYYAQPSEVLDIMSLLLKVKL
Ga0213869_1000012051F103922GAGGMSTYMKQYVGEYMFDHWLKNHQKLGGFLASSYVDWDILHSPLHDIVHKLEEFRQVPFDAVMEFSDAGITDNSMEYRDIVEDVSKIFYLCEMINYNELIFHPQILHEPWHKRYRVHPGSGRLMALWLCGYEKIKTIYIHFDEPGFQPPGDCFVIKDRATAQKEFHVNQVLVKKLEVETYSAFPKTEAERIRTHAQDYEWDWSHIHTDKFWQFMRFSEGSTFLEHKNMWRSYAIDAWQDLQHDHIQIGTTSFDFDHTGKVIEVHRNTGTETVDTILHK
Ga0213869_1000012052F069361GGAMNPKDFKEARYTESNWFGTFTLGHDDPGKTNWIDEGEEKLGCASGYTKDSVEYFINDWRYRGKRVPEMGATAAFGCSYTFGYGVNFTWPSMLGVVNIGQNGASNDQIARLAITYCKTFKPEQIYVLWTFKERREHINADGGLDKFRSLSDKAIKEELKNPTWASNHAMLSNSSADEYNFKKNKMLLTSYCVVNNIKINQLTISDLSKAEFPPARDNDHPGEDWHTNIAGIICEA
Ga0213869_1000012058F080496AGGAGMETWEKDLNENMESIRNSYKSIMRTGYSIMGVMILWIGIEIGMML
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Institute for Fundamental Biomedical Research
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