Scaffold Ga0213869_10000052

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10000052
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 92001
• Total Scaffold Genes: 138
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (53.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009654	Metagenome	315	Y
F031508	Metagenome / Metatranscriptome	182	N
F077968	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_10000052125	F077968	AGAAG	MTDNWKKWTIWTSIYVFDYCVFSWRNHMWPHLDGYADEGMMKTLFWHYLNYGNTTIYYEWDN
Ga0213869_1000005250	F031508	AGCAGG	MFDRIYSNLCKGNKSRKEDYKKYSGLHEHHVVPKHMGGTDDDCNLTYLNVREHIIAHYLLWKIYKNPNDLRSMKMLGANLSPQYRKIIGEFCRDNKIGFFSVPIDERKEWMVKGMETQKQEYLKDNIKNFYYWSTEEGRKERASFGGKQRASKEFNYWASNQGRQQRASLGGKAHKGKKVMYLPGTKGWKRILPENIDTKLNEGWKFGTGEPAPNSIIKKSS
Ga0213869_1000005269	F009654	N/A	MIEKVLEEMDGVLRKFRISLPEDKCVIKLQEYCKFSYTLLKVPVVSKPLCAGANCHNNVNHYGNTYGGEKISGYYLITDIDDETYGCAIYHSIWKNTYGDLIDITPFDDGREYNMFSVLDDTDYYSGVVYDGKDYKLLEPGLNIV