NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10000029

Scaffold Ga0213869_10000029


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10000029 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)118931
Total Scaffold Genes125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (16.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002698Metagenome / Metatranscriptome536Y
F047320Metagenome / Metatranscriptome150Y
F051049Metagenome / Metatranscriptome144Y
F071304Metagenome / Metatranscriptome122Y
F092876Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000002912F092876N/AMENKIKTPITELIEQFESELHHDNVNSGLRYAIAISKRMLKKEQKIMCWFAREWHAIKKE
Ga0213869_1000002918F047320GGAGMKEEDFIHRHIESILDVPGDLSSGINGCILASVFDRACDILESNGSKKPNIVDVIDDPECELTYLVENG
Ga0213869_1000002958F002698N/AMKLKLDRIDQHALTAFINRVKPIDSFIYMKIADGTINSTVYLPQRDAVKHHSVEASTIFQVEAWPETDKEMKIAFFEGNKVIEAIKHFDADAIKGEIEFIENDNELVAASLRIFNDELEITLACSEPSLGFKDLTQEQIDVIFAKEDSKFDFSFDTHMIGKVKNLFSLDKDETFSIKSDVSGVSVSGKSFSVVINPDTSGNGEVTVYKKYLSLLDKDEQTVYVSGSKVVFNSNDTNTLLTVSTCQTA
Ga0213869_1000002975F071304GAGMKKIKAKLLTYLFTDWVKSETDVETLIMTRNMIEQRKNKITGHTPVLGFRMHGTTNIK
Ga0213869_100000298F051049N/AMTVEQRLSNLEVSYIKWSEKENGFEDAGYIWWEREKDCQEWCNKEKTYVPMSTTKTLVTMRAWVKRQKSFCS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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