Scaffold Ga0213869_10000028

Overview

Basic Information

• Taxon OID: 3300021375
• Scaffold ID: Ga0213869_10000028
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 120835
• Total Scaffold Genes: 114
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 80 (70.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017578	Metagenome / Metatranscriptome	240	Y
F050003	Metagenome / Metatranscriptome	146	Y
F056139	Metagenome / Metatranscriptome	138	Y
F075421	Metagenome	119	Y
F077923	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213869_10000028113	F017578	AGG	MQALNQITGAMDDIDTILQKHLRNYTQVFRRYTPYDPREWTELLKRVHRDFGRPSERWAWMIDHEWQKQMMEDPEWRGVAVNEWHVVFYFKEESDAVMFGLKY
Ga0213869_1000002845	F050003	AGGAG	MGRPLKIKISDTQDAGFNNPGPLIGMTPTPAGELFYGVVGGNISTSDYDFPVTTTRIRPGGGSITAEGDGFIVRQKGASKYLVSRLDASAIDPANAVVGSIVRIVSVGDTDWNAMGMPGDGFVSNGAIFTVEAASAAGSSGTVAECGICTLANVNDSALAVGDMTVSYTDIGSSAVRLKRFSNKHGISFSGGVVLLNFFNQLDDTVVIGGSGSSASPNTRDLVQIENASLG
Ga0213869_1000002859	F077923	N/A	MGLIKFKHNNRTIAIVRNHKCSTTTMLSYVAQALWNADPKEEQFYQNFQNEAPGVYNKARSFEEFESELLDADIRIALWRDPIDKFVSGFYHTMSNPANKNLWIKSPSLTNFLKDIAVYRQNPNVADHCETNTARLGSNRAVYTHIYNYKHVHKIAGILGVPALDTHHRRDNTMRAGPTDLQRLRIRQVMLEDYSNGWC
Ga0213869_100000286	F075421	AGAAG	MITAINFGGLSKPTPKPQPLVAPLPEEYKQPAPNQTIKNHSPKPQ
Ga0213869_1000002893	F056139	AGG	MIEATPYLTWEYSDDPEIQYLECPAPTPMRNHMPKWFKDLKAKSQKVVTGDEHRAVFAENKTIRNCLGFRGIANIGYTIPLPEDLDGYDTYFARGRVSAPMIEGTLFGNKGDKPWASDDNSLYEYRFKILNYPWRAKMDKGWRLLVLPYLLDWNNDWNEFSGTVEPNYDVQHGTQIGSSLKWTTPIDPEYNYYNLETVIAYKRSVSKINKGTLTFCAVPLFDPELLDKQTEGVYNDNMD