Scaffold Ga0213865_10140673

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10140673
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1246
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002858	Metagenome / Metatranscriptome	525	Y
F024320	Metagenome / Metatranscriptome	206	Y
F030067	Metagenome / Metatranscriptome	186	N
F030293	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_101406731	F030293	N/A	MIVEMLDDRVSIEALGLIPHFFERSLYIEGQSIQSVANKMDSLYHYGGFVYPFEGTIVDNKGRYLADNDEDGPLDPIAKITKLGFTLWVYPYSIVGLTDDKGNQKIARFD
Ga0213865_101406732	F030067	GGAG	MPRESWEIAHDEYYDDLEADDYVGLDDISAWKEEEQKVIDELCKRMEKAYDDNR
Ga0213865_101406733	F024320	GGAG	MTIDEYAVECGGLEDNSGPTVDPLEHAMVEHLVEFDTEMYRLQSRRKYKGLSYKHLEMLIVELHGEHWRDAL
Ga0213865_101406735	F002858	AGGAG	MLIDEKSIYEVTGGDYSVYCFGYTQARTVTNDIMRRDPWGGIPFVIRKDLEVSFDDKGNVVMPRVVLDK