Scaffold Ga0213865_10105024

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10105024
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1500
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F004856	Metagenome / Metatranscriptome	421	Y
F010571	Metagenome	302	Y
F051564	Metagenome	144	Y
F052274	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_101050241	F010571	N/A	LLQLITYTGGIDMSMSTRQAIYIENLYEGFYEKHYKELSKTSDDVEWIENEASRLAEIDLDNFEMEG
Ga0213865_101050242	F051564	GGAGG	MSIPKQMLKEWCETYEEAIETLDYLANRSIGTAKEEIKESLEDFFIDNGLMSEEEFKQEVDNENL
Ga0213865_101050244	F003976	AGGAGG	MGKVRDAYYDEKLDILDTLEKLDMSVRFLNVWVNEPMGFENAKYLLEKNANQKFDWFSRDMVKELVEEETYG
Ga0213865_101050246	F004856	AGGAGG	MNVDSDKPRYIESRYSAYLNWDLEELGIDWDEVEDWDIIRITLFIKFKDGTTKEYENWDAFDNVDYKHGLEEVLILNENCDKVEGLN
Ga0213865_101050248	F052274	GAGG	MNRTLYKKLEDICAREYILNKLSSSKFRTFVDFLYDDIRTWD