Scaffold Ga0213865_10038853

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10038853
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2658
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014373	Metagenome / Metatranscriptome	263	N
F016661	Metagenome	245	Y
F065668	Metagenome	127	N
F078585	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_1003885311	F014373	AGGA	MSRCKACDVILTEAELRKRDRVTDEHLDLCAVCHSASDEAIEENWATAEEREIIRSNN
Ga0213865_100388535	F016661	AGGGGG	MNYTAERYLALKQFEREQKRDKIRALLWNVSIGSIYAMAVIQVFTGVIS
Ga0213865_100388536	F065668	AGG	MMYTIWVGSVEVTPHLTNREEAYRIASNWRNDGYTDVIVERYKPYEYHS
Ga0213865_100388539	F078585	AGGAG	MSRYEDDSSYDYSDYCEGKGYYESYVEKPFDEDEASLRRIEAREEAERLAKLYPPIGKQEMQERIKEVKTRLGAKYND