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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021373 Open in IMG/M |
| Scaffold ID | Ga0213865_10033492 Open in IMG/M |
| Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2878 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F015342 | Metagenome / Metatranscriptome | 255 | Y |
| F025285 | Metagenome / Metatranscriptome | 202 | Y |
| F039045 | Metagenome | 164 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213865_100334922 | F015342 | N/A | MSVAANMPARNVKGNVQAQDKILYVANKLGLSSLKYMQATTRVIYDQSTTAATQHTLFEGAAARSFPLTNLGANGNTFQVDEALLVEKIAFFVPDADDGQNFASSLNSYKFDLIIGNKTVMKDVVVEYAGQQAFYNDGTAGSQVIDLEGVGILIPPQVEFKINVKPFVTNTRGAASARVGCYLFGTGVLLNFNTSI |
| Ga0213865_100334923 | F025285 | N/A | MSQVGKLNMVNAKLGATMPGQQTTRYIYDSVVAAAGQVNFNFFQTFAGKTDLQSNLTTNKLDSSESMVIKSIYVATNVTQGLTGHSNLNITVGNQVVLKDFNLAFNATNRGVSFDRLHSGIVTTDYVEVRLLTDIVIPPQVNFKATLELAEGGTLAAESITLGLKGYGTIFSAGSTF |
| Ga0213865_100334924 | F000710 | N/A | MPMNDISYRQGLRTKGFQTTVPTTGADQTLSLSGLAKQFEGILCTSTTSAAPGTIIDPAQLRLTLIINNDVVIDDDVAYHYAVSATGGFSGGFPFFIPFPRRLTGQDTILLKVTNSSGASQILNTTVYYRNEI |
| Ga0213865_100334925 | F039045 | N/A | MSIAIPTLIEKDIRCGKARYQTYQTGMGGQSVLVVPDNSYITIFGYDYSPAGGGITLGDDTGGNAPKLMPALLRPFETQQISFYTGQAFHPFIHHVDLRRSGEDSVTATTDRFEMSIQPIERSTYIISNRSVAITVGLIQRVELNAAAAIPVTDKTPPNLTYGGSAATPNVESIYSSNLANPPSQVQPSLKQFQDYGLGGVPGNAQDQAFALPDGIDGLIEPSQYLEDNFDITFREAAACNYFLNIHYALYTNATPEQLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |