NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10025260

Scaffold Ga0213865_10025260


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10025260 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3347
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001942Metagenome / Metatranscriptome613Y
F018155Metagenome / Metatranscriptome236Y
F036651Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100252603F001942N/AVPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLMVEFGSAKYTVQVKSRRATKEKKFVFAAENSRSMSETYKHYTCDILAFVFFNGEEKRIMFKANTSSQNYFTFDKKSINESMELDSLKETLDNLSSVPVLNPLI
Ga0213865_100252604F036651AGGAMREITLNEVGKTKPLILAKRQIRGYYRDVFTGENKVQVDDKEYIVRDSLTEIAYLMGVNR
Ga0213865_100252607F018155AGGAGMGQNSQAVEKRRKELEAEKLDKQIKTYYFQKGAGKHYREVTYMSGKVVRTDYDA
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